PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.28200s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 458aa    MW: 51195.9 Da    PI: 9.4113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.28200s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-067193123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C+ C+k F+r  nL+ H r H
  Cagra.28200s0002.1.p 71 FICEVCNKGFKRDQNLQLHRRGH 93
                          89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-77093No hitNo description
Gene3DG3DSA:3.30.160.603.5E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8877193IPR007087Zinc finger, C2H2
PfamPF121712.0E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0137193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-7143168No hitNo description
SMARTSM00355180148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MMMPDDHHHH HLSFPSYVLH QEHITPNDPN PNPNATSSNS AKRKRNLPGN PDPDAEVIAL  60
SPNSLMATNR FICEVCNKGF KRDQNLQLHR RGHNLPWKLK QRTNKELVKK KVYICPEKTC  120
VHHDPARALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVM SDWKAHSKIC GTREYRCDCG  180
TLFSRKDSFI THRAFCDALA EESARFVSVP PAAASATPGY LNNAPDAEIN LGNINPNHQH  240
GQLNTTSSQL DHQQGFNFNR QAFLGQTFTN QLPTTQTNVF ASPSTRSQSD SLQNLWQLQG  300
QSSHQWLLNE NNNNNILQRG ISKNEDEHEI KNVVTSGSLF SSESHNNSNN YNQNGGQVTS  360
MSATALLQKA AQMGSKRSSS NSNNSKAFGL MSTTFIFNNK QTENIKTKEV DEGGFTRDFL  420
GVGSQHRTWP LMMVNHNIPD SSPPANADGT PTTDRNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291100.10.0hypothetical protein CARUB_v10017213mg
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLR0HJJ20.0R0HJJ2_9BRAS; Uncharacterized protein
STRINGscaffold_501386.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein